Atlantis is an ancient location found deep under Jolly Roger's Lagoon in Banjo-Tooie. It is based off on the eponymous fictional island.
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| Game(s) | Banjo-Tooie |
| World(s) | Jolly Roger's Lagoon |
Many areas can be found within Atlantis, namely the Electric Eel's Lair, the Seaweed Sanctum, the Ancient Swimming Baths and the Temple of the Fishes. Wumba's Wigwam can also be found at the end of a tunnel in the location. A large amount of fish, such as the Swellbellies, Frazzles and Seemees, swim through it.